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學術著作 |
Update:
2007/07/31
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Chen, J.J.,
Lee, T., Delongchamp, R.R., Chen, T., and Tsai, C.A.
(2007). Significance analysis of groups of genes in
expression profiling. Bioinformatics, to appear. (SCI,
IF=4.894)
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Tsai, C.A.
and Chen, J.J. (2007). Kernel Estimation for Adjusted
p-values in Multiple Testing. Computational Statistics &
Data Analysis, 51, 3885-3897. (SCI, IF=0.733)
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Tsai, C.A.,
Chen, D.T., Chen, J.J., Balch, C.M., Thompson, J.F., and
Soong, S.J. (2007). An integrated tree-based
classification approach to prognostic grouping with
application to localized melanoma patients. Journal of
Biopharmaceutical statistics, 17(3), 445-460. (SCI)
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Chen, J.J.,
Tsai, C.A., Tzeng, S.L. and Chen, C.C. (2007).
Gene selection with multiple ordering criteria. BMC
Bioinformatics, 8:74. (SCI, IF=4.96)
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Hsueh, H.M.
and Tsai, C.A. (2006). Controlling the false
discovery rate for the SAM method. Journal of the
Chinese Statistical Association, 44, 364-381.
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Hsueh, H.M.,
Tsai, C.A., and Chen, J.J. (2006). Incorporating
the number of true null hypotheses to improve power in
multiple testing: application to gene microarray data.
Journal of Statistical Computation and Simulation, to
appear. (SCI, IF=0.284)
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Chen, J.J.,
Wang, S.J., Tsai, C.A., and Lin, C.J. (2006).
Selection of Differentially Expressed Genes in
Microarray Data Analysis. The Pharmacogenomics Journal,
1-9. (SCI, IF=3.989)
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Young, J.F.,
Tsai, C.A., Chen, J.J., Latendresse, J.R. and
Kodell, R.L. (2006). Database Composition Can Affect the
Structure-Activity Relationship Prediction. Journal of
Toxicology and Environmental Health, Part A, 69,
1527-1540. (SCI, IF=1.892)
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Chen, J.J.,
Tsai, C.A., Moon, H., Ahn, H., Young, J.F., and
Chen, C.H. (2006). Decision Threshold Adjustment in
Class Prediction. SAR and QSAR in Environmental
Research, 17(3),337-352. (SCI, IF=1.753)
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Chen, J.J.,
Tsai, C.A., Young, J.F. and Kodell, R.L. (2005).
Classification Ensembles for Unbalanced Class Sizes in
Predictive Toxicology. SAR and QSAR in Environmental
Research, 16(6), 517-529. (SCI, IF=1.753)
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Tsai, C.A.,
Wang, S.J., Chen, D.T., and Chen, J.J. (2005). Sample
Size for Gene Expression Microarray Experiments.
Bioinformatics, 21(8), 1502-1508. (SCI, IF=6.019)
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Akerman, G.S.,
Rosenzweig, B.A., Domon, O.E., Tsai, C.A.,
McGarrity, L.J., Bishop, M., MacGregor, J.T., Sistare,
F.D., Chen, J.J., and Morris, S.M. (2005). Alterations
in the gene expression profiles and the DNA damage
response in ionizing radiation-exposed TK6 cells.
Environmental and Molecular Mutagenesis, 45, 188-205.
(SCI, IF=2.043)
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Tsai, C.A.,
Lee, T.C., Ho, I.C., Yang, U.C., Chen, C.H., and Chen,
J.J. (2005). Multi-class Clustering and Prediction in
the Analysis of Microarray Data. Mathematical
Biosciences, 193, 79-100. (SCI, IF=1.358)
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Tsai, C.A.
and Chen, D.T. (2005). Quality assessment of gene
expression data. In: Pr'oceedings of Emerging
Information Technology Conference, 2005. 15-16 A ug,
2005.
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Tsai, C.A.,
and Chen, J.J. (2004). Significance Analysis of ROC
Indices for Comparing Diagnostic Markers: Applications
to Gene Microarray Data. Journal of Biopharmacetdical
statistics, 14(4),985-1003.
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Tsai, C.A.,
Chen, C.H., Lee, T.C., Ho, I.C., Yang, U.C., and Chen,
J.J. (2004). Gene Selection for Sample Classification
in Microarray Experiments. DNA and Cell Biology, 23,
607-614. (SCI,IF=1.794)
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Tsai, C.A.,
Hsueh, H-M, and Chen, J.J. (2004). A generalized
additive model for microarray gene expression data
analysis. Journal of Biopharmaceutical statistics, 14,
553-573.
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Chen, J.J.,
Delongchamp, RR, Tsai, C.A., Hsueh, H.-M.,
Sistare, F.D., Thompson, KL., Desai, V.G., and Fuscoe,
J.C. (2004). Analysis of Variance Components in Gene
Expression Data. Bioinformatics, 20, 1436-1446. (SCI,IF=6.019)
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Akerman, G.S.,
Rosenzweig, B.A., Domon, O.E., McGarrity, L.J.,
Blankenship, L.R, Tsai, C.A., Culp, S.J.,
MacGregor, J.T., Sistare, F.D., Chen, J.J., and Morris,
S.M. (2004). Gene Expression Profiles and Genetic
Damage in Benzo(a)Pyrene Diol Epoxide-Exposed TK6 Cells.
Mutation Research/Fundamental and Molecular Mechanisms
of Mutagenesis, 549(1-2):43-64. (SCI, IF=3.340)
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Tsai, C.A.,
Hsueh, H.-M., and Chen, J.J. (2003). Estimation of false
discovery rates in multiple testing: application to gene
microarray data. Biometrics, 59, 1071-1081. (SCI,
IF=1.602)
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Tsai, C.A.,
Chen, YJ., and Chen, J.J. (2003). Testing for
Differentially Expressed Genes for Microarray Data.
Nucleic Acid Research, 31(9), e52. (SCI,IF=7.552)
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Fan, T.H. and
Tsai, C.A. (1999). A Bayesian Method in
Determining the Order of a Finite State Markov Chain.
Communication in Statistics: Theory and Method, 28(7),
1711-1730. (SCI, IF=0.209)
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Fan, T.H. and
Tsai, C.A. (1999). Intrinsic Bayes factor for
change-point analysis of a Gaussian model. Dissertation.
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